Exploration and evaluation of root-associated endophytes against Meloidogyne incognita infecting tomato

Authors

  • M Devindrappa ICAR-Indian Institute of Horticultural Research, Bengaluru - 560 089, India , Indian Institute of Horticultural Research image/svg+xml Author
  • A Kumara Indian Agricultural Research Institute image/svg+xml , ICAR-Indian Agricultural Research Institute, New Delhi - 110 012, India Author
  • T G Manjunatha Indian Institute of Vegetable Research image/svg+xml , ICAR-Indian Institute of Vegetable Research, Varanasi - 221 305, India Author
  • T Prabhulinga National Bureau of Agricultural Insect Resources image/svg+xml , ICAR-National Bureau of Agricultural Insect Resources, Bengaluru - 560 024, India Author
  • S H Thube Central Institute for Cotton Research image/svg+xml , ICAR-Central Institute for Cotton Research, Nagpur - 577 204, India Author

DOI:

https://doi.org/10.24154/jhs.v20i1.3008

Keywords:

Antagonism, endophytes, fungus, Meloidogyne incognita, plant growth promoting traits

Abstract

The fungal endophytes play a key role in habitat adaptation of plants resulting in enhanced plant performance and withstand against biotic and abiotic stresses in the environment. The present study was conducted to isolate root-associated fungal endophytes from cultivated crops and evaluated for their efficacy against Meloidogyne incognita infecting tomato plants. Total 262 fungal root endophytes were isolated from 14 cultivated crops and classified and also grouped into 4 genera (Aspergillus sp., Penicillium sp., Fusarium sp., Trichoderma sp.) based on morphological structure. The colonization rate of these isolates ranged from 0 to 100%; Shannon’s index (H) is 0 to 1.37; Simpson (1-D) is 0 to 0.74 and Dominance (D) is 0.4 to 1. Antagonism evaluation of fungal endophytic isolates on M. incognita revealed that 5 isolates caused 100 per cent juveniles (J2) mortality, 14 isolates caused mortality in the range of 90-99 per cent, 12 isolates caused 75- 89 per cent mortality, and remaining 26 isolates caused <75 percent J2 mortality. The isolates that caused 100 per cent J2s mortality were molecularly characterized based on ITS-1 and ITS-2 gene nucleotide sequences and identified as Aspergillus flavipes, Penicillium murcianum, Fusarium oxysporum, Trichoderma asperellum and Trichoderma viride. Thesefungal root endophytic isolates possessed plant growth promotion traits, effectively parasitized the eggs of M. incognita and significantly reduced the infection in tomato.

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Author Biographies

  • M Devindrappa, ICAR-Indian Institute of Horticultural Research, Bengaluru - 560 089, India, Indian Institute of Horticultural Research


    ICAR-Indian Institute of Horticultural Research, Bengaluru - 560 089, India

  • A Kumara, Indian Agricultural Research Institute, ICAR-Indian Agricultural Research Institute, New Delhi - 110 012, India


    ICAR-Indian Agricultural Research Institute, New Delhi - 110 012, India

  • T G Manjunatha, Indian Institute of Vegetable Research, ICAR-Indian Institute of Vegetable Research, Varanasi - 221 305, India


    ICAR-Indian Institute of Vegetable Research, Varanasi - 221 305, India

  • T Prabhulinga, National Bureau of Agricultural Insect Resources, ICAR-National Bureau of Agricultural Insect Resources, Bengaluru - 560 024, India

    ICAR-National Bureau of Agricultural Insect Resources, Bengaluru - 560 024, India

  • S H Thube, Central Institute for Cotton Research, ICAR-Central Institute for Cotton Research, Nagpur - 577 204, India


    ICAR-Central Institute for Cotton Research, Nagpur - 577 204, India

References

Arnold, A. E. (2007). Understanding the diversity of foliar endophytic fungi: Progress, challenges, and frontiers. Fungal Biology Reviews, 21(2–3), 51–66. https://doi.org/10.1016/j.fbr.2007.05.003

Bernardes, M. F. F., Pazin, M., Pereira, L. C., & Dorta, D. J. (2015). Impact of pesticides on environmental and human health. In Toxicology studies – Cells, drugs and environment (pp. 195–233). IntechOpen. https://doi.org/10.5772/59710

Busby, P. E., Ridout, M., & Newcombe, G. (2016). Fungal endophytes: Modifiers of plant disease. Plant Molecular Biology, 90, 645–655. https://doi.org/10.1007/s11103-015-0412-0

Ciancio, A., Pieterse, C. M. J., & Mercado-Blanco, J. (2019). Harnessing useful rhizosphere microorganisms for pathogen and pest biocontrol (2nd ed.). Frontiers in Microbiology, 10, Article 1935. https://doi.org/10.3389/fmicb.2019.01935

Coleman-Derr, D., Desgarennes, D., Fonseca-Garcia, C., Gross, S., Clingenpeel, S., Woyke, T., North, G., Visel, A., Partida-Martinez, L. P., & Tringe, S. G. (2016). Plant compartment and biogeography affect microbiome composition in cultivated and native agave species. New Phytologist, 209, 798–811. https://doi.org/10.1111/nph.13697

Dababat, A. A., Selim, M. E., Saleh, A. A., & Sikora, R. A. (2008). Influence of Fusarium wilt-resistant tomato cultivars on root colonization of the mutualistic endophyte Fusarium oxysporum strain 162 and its biological control efficacy toward the root knot nematode Meloidogyne incognita. Journal of Plant Diseases and Protection, 115(6), 273–278. https://doi.org/10.1007/BF03356276

Devindrappa, B., Singh, M., Mishra, R. K., & Kumar, K. (2018). Antagonistic potential of indigenous Trichoderma spp. against Meloidogyne javanica. Journal of Food Legumes, 31(4), 230–233. https://pub.isprd.in/index.php/jfl/article/view/414

El Aimani, A., Houari, A., Laasli, S. E., Mentag, R., Iraqi, D., Diria, G., Khayi, S., Lahlali, R., Dababat, A. A., & Mokrini, F. (2022). Antagonistic potential of Moroccan entomopathogenic nematodes against root-knot nematodes, Meloidogyne javanica, on tomato under greenhouse conditions. Scientific Reports, 12, Article 8766. https://doi.org/10.1038/s41598-022-08766-5

Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39(4), 783–791. https://doi.org/10.1111/j.1558-5646.1985.tb00420.x

Fesel, P. H., & Zuccaro, A. (2016). Dissecting endophytic lifestyle along the parasitism/mutualism continuum in Arabidopsis. Current Opinion in Microbiology, 32, 103–112. https://doi.org/10.1016/j.mib.2016.05.008

Hardoim, P. R., van Overbeek, L. S., Berg, G., Pirttilä, A. M., Compant, S., Campisano, A., Döring, M., & Sessitsch, A. (2015). The hidden world within plants: Ecological and evolutionary considerations for defining functioning of microbial endophytes. Microbiology and Molecular Biology Reviews, 79, 293–320. https://doi.org/10.1128/MMBR.00050-14

Khare, E., Mishra, J., & Arora, N. K. (2018). Multifaceted interactions between endophytes and plant: Developments and prospects. Frontiers in Microbiology, 9, Article 2732. https://doi.org/10.3389/fmicb.2018.02732

Kiarie, S., Nyasani, J. O., Gohole, L. S., Maniania, N. K., & Subramanian, S. (2020). Impact of fungal endophyte colonization of maize (Zea mays L.) on induced resistance to thrips and aphid-transmitted viruses. Plants, 9(4), Article 416. https://doi.org/10.3390/plants9040416

Kimura, M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16(2), 111–120. https://doi.org/10.1007/BF01731581

Kumar, K. K., & Dara, S. K. (2021). Fungal and bacterial endophytes as microbial control agents for plant-parasitic nematodes. International Journal of Environmental Research and Public Health, 18, Article 4269. https://doi.org/10.3390/ijerph18084269

Leoni, C., Piancone, E., Sasanelli, N., Bruno, G. L., Manzari, C., Pesole, G., Ceci, L. R., & Volpicella, M. (2020). Plant health and rhizosphere microbiome: Effects of the bionematicide Aphanocladium album in tomato plants infested by Meloidogyne javanica. Microorganisms, 8, Article 21. https://doi.org/10.3390/microorganisms8010021

Li, D., Bodjrenou, D. M., Zhang, S., Wang, B., Pan, H., Yeh, K. W., Lai, Z., & Cheng, C. (2021). The endophytic fungus Piriformospora indica reprograms banana to cold resistance. International Journal of Molecular Sciences, 22(9), Article 4973. https://doi.org/10.3390/ijms22094973

Natsiopoulos, D., Topalidou, E., Mantzoukas, S., & Eliopoulos, P. A. (2024). Endophytic Trichoderma: Potential and prospects for plant health management. Pathogens, 13(7), Article 548. https://doi.org/10.3390/pathogens13070548

Stirling, G. R. (2011). Biological control of plant-parasitic nematodes: Progress, problems and prospects. CAB International. https://doi.org/10.1079/9781845937207.0000

Taylor, A. A., Dropkin, V. H., & Martin, G. C. (1955). Perennial pattern of root nematodes. Phytopathology, 45(4), 26–34.

Topalovic, O., Hussain, M., & Heuer, H. (2020). Plants and associated soil microbiota cooperatively suppress plant-parasitic nematodes. Frontiers in Microbiology, 11, Article 1383. https://doi.org/10.3389/fmicb.2020.01383

Tyśkiewicz, R., Nowak, A., Ozimek, E., & Jaroszuk-Ściseł, J. (2022). Trichoderma: The current status of its application in agriculture for the biocontrol of fungal phytopathogens and stimulation of plant growth. International Journal of Molecular Sciences, 23(4), Article 2329. https://doi.org/10.3390/ijms23042329

White, T. J., Bruns, T., Lee, S., & Taylor, J. W. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In M. A. Innis, D. H. Gelfand, J. J. Sninsky, & T. J. White (Eds.), PCR protocols: A guide to methods and applications (pp. 315–322). Academic Press. https://doi.org/10.1016/B978-0-12-372180-8.50042-1

Xiang, N., Lawrence, K. S., & Donald, P. A. (2018). Biological control potential of plant growth-promoting rhizobacteria suppression of Meloidogyne incognita on cotton and Heterodera glycines on soybean: A review. Journal of Phytopathology, 166, 449–458. https://doi.org/10.1111/jph.12607

Yu, Y., Gui, Y., Li, Z., Jiang, C., Guo, J., & Niu, D. (2022). Induced systemic resistance for improving plant immunity by beneficial microbes. Plants, 11(3), Article 386. https://doi.org/10.3390/plants11030386

Zida, E. P., Thio, I. G., Deleuran, L. C., Wulff, E. G., Lund, O. S., & Shetty, P. H. (2014). Fungal endophytes of sorghum in Burkina Faso: Occurrence and distribution. African Journal of Microbiology Research, 8(46), 3782–3793. https://doi.org/10.5897/AJMR2014.7020

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Published

30-06-2025

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Research Papers

How to Cite

Devindrappa, M., Kumara, A., Manjunatha, T. G., Prabhulinga, T., & Thube, S. H. (2025). Exploration and evaluation of root-associated endophytes against Meloidogyne incognita infecting tomato. Journal of Horticultural Sciences, 20(1). https://doi.org/10.24154/jhs.v20i1.3008

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